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Bibliographic references for the synthetic tree

The following studies (listed alphabetically by first author) have contributed to the current synthetic tree.

Quintero, Esther, Camila C. Ribas, Joel Cracraft. 2012. The Andean Hapalopsittaca parrots (Psittacidae, Aves): an example of montane-tropical lowland vicariance. Zoologica Scripta 42 (1): 28-43.
A. Manegold, 2008, 'Composition and phylogenetic affinities of vangas (Vangidae, Oscines, Passeriformes) based on morphological characters', Journal of Zoological Systematics and Evolutionary Research, vol. 46, no. 3, pp. 267-277
ALICE CIBOIS, JEAN-CLAUDE THIBAULT, ERIC PASQUET, 2008, 'Systematics of the extinct reed warblers Acrocephalus of the Society Islands of eastern Polynesia', Ibis, vol. 150, no. 2, pp. 365-376
Aliabadian, Mansour, Mohammad Kaboli, Roger Prodon, Vincent Nijman, Miguel Vences. 2007. Phylogeny of Palaearctic wheatears (genus Oenanthe)—Congruence between morphometric and molecular data. Molecular Phylogenetics and Evolution 42 (3): 665-675
Alstrom, P., D. M. Hooper, Y. Liu, U. Olsson, D. Mohan, M. Gelang, H. Le Manh, J. Zhao, F. Lei, T. D. Price. 2014. Discovery of a relict lineage and monotypic family of passerine birds. Biology Letters 10 (3): 20131067-20131067.
Alström, P., Cibois, A., Irestedt, M., Zuccon, D., Gelang, M., Fjeldså, J., Andersen, M. J., Moyle, R. G., Pasquet, E., & Olsson, U. (2018). Comprehensive molecular phylogeny of the grassbirds and allies (Locustellidae) reveals extensive non-monophyly of traditional genera, and a proposal for a new classification. Molecular Phylogenetics and Evolution, 127, 367–375.
Alström, P., Höhna, S., Gelang, M., Ericson, P. G., & Olsson, U. (2011). Non-monophyly and intricate morphological evolution within the avian family Cettiidae revealed by multilocus analysis of a taxonomically densely sampled dataset. BMC Evolutionary Biology, 11(1), 352.
Alström, P., Jønsson, K. A., Fjeldså, J., Ödeen, A., Ericson, P. G. P., & Irestedt, M. (2015). Dramatic niche shifts and morphological change in two insular bird species. Royal Society Open Science, 2(3), 140364.
Alström, P., Mohammadi, Z., Enbody, E., Irestedt, M., Engelbrecht, D., Crochet, P.-A., Guillaumet, A., Rancilhac, L., Tieleman, B. I., Olsson, U., Donald, P. F., & Stervander, M. (2023). Systematics of the avian family Alaudidae using multilocus and genomic data. Avian Research, 100095.
Alström, P., Rasmussen, P. C., Sangster, G., Dalvi, S., Round, P. D., Zhang, R., Yao, C., Irestedt, M., Le Manh, H., Lei, F., & Olsson, U. (2019). Multiple species within the Striated Prinia Prinia crinigera– Brown Prinia P. polychroa complex revealed through an integrative taxonomic approach. Ibis, 162(3), 936–967. Portico.
Alström, P., Rasmussen, P. C., Xia, C., Gelang, M., Liu, Y., Chen, G., Zhao, M., Hao, Y., Zhao, C., Zhao, J., Yao, C., Eaton, J. A., Hutchinson, R., Lei, F., & Olsson, U. (2018). Taxonomy of the White-browed Shortwing (Brachypteryx montana) complex on mainland Asia and Taiwan: an integrative approach supports recognition of three instead of one species. Avian Research, 9(1).
Alström, P., Rasmussen, P. C., Xia, C., Zhang, L., Liu, C., Magnusson, J., Shafaeipour, A., & Olsson, U. (2021). Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species. Ornithology, 138(2).
Alström, P., Rasmussen, P. C., Zhao, C., Xu, J., Dalvi, S., Cai, T., Guan, Y., Zhang, R., Kalyakin, M. V., Lei, F., & Olsson, U. (2016). Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species. Avian Research, 7(1).
Alström, Per, Keith N. Barnes, Urban Olsson, F. Keith Barker, Paulette Bloomer, Aleem Ahmed Khan, Masood Ahmed Qureshi, Alban Guillaumet, Pierre-André Crochet, Peter G. Ryan. 2013. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular Phylogenetics and Evolution 69 (3): 1043-1056.
Andersen, M. J., McCullough, J. M., Friedman, N. R., Peterson, A. T., Moyle, R. G., Joseph, L., & Nyári, Á. S. (2019). Ultraconserved elements resolve genus-level relationships in a major Australasian bird radiation (Aves: Meliphagidae). Emu - Austral Ornithology, 119(3), 218–232.
Arbabi, Tayebeh, Javier Gonzalez, Michael Wink. 2014. A re-evaluation of phylogenetic relationships within reed warblers (Aves: Acrocephalidae) based on eight molecular loci and ISSR profiles. Molecular Phylogenetics and Evolution 78: 304-313.
Armenta, Jessica K., Jason D. Weckstein, Daniel F. Lane. 2005. Geographic variation in mitochondrial DNA sequences of an Amazonian nonpasserine: The Black-spotted Barbet complex. The Condor 107 (3): 527-536.[0527:gvimds];2
Arshad, Muhammad, Javier Gonzalez, Abdel Aziz El-Sayed, Tim Osborne, Michael Wink. 2009. Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers. Journal of Ornithology 150 (2): 419-430.
Barker, F. K., K. J. Burns, J. Klicka, S. M. Lanyon, I. J. Lovette. 2013. Going to extremes: contrasting rates of diversification in a recent radiation of New World passerine birds. Systematic Biology 62 (2): 298-320.
Barker, F. Keith, Alice Cibois, Peter Schikler, Julie Feinstein, Joel Cracraft. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America 101 (30): 11040-11045.
Barker, F. Keith, Kevin J. Burns, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2015. New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies. The Auk 132 (2): 333-348.
Barker, F.K. 2014. Mitogenomic data resolve basal relationships among passeriform and passeridan birds. Molecular Phylogenetics and Evolution 79: 313-324.
Batista, R., Olsson, U., Andermann, T., Aleixo, A., Ribas, C. C., & Antonelli, A. (2020). Phylogenomics and biogeography of the world’s thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history. Proceedings of the Royal Society B: Biological Sciences, 287(1919), 20192400.
Benz, Brett W., Mark B. Robbins, A. Townsend Peterson. 2006. Evolutionary history of woodpeckers and allies (Aves: Picidae): placing key taxa on the phylogenetic tree. Molecular Phylogenetics and Evolution 40 (2): 389-399.
Benz, Brett W., Mark B. Robbins. 2011. Molecular phylogenetics, vocalizations, and species limits in Celeus woodpeckers (Aves: Picidae). Molecular Phylogenetics and Evolution 61 (1): 29-44.
Beresford, P., F.K. Barker, P.G. Ryan, T.M. Crowe. 2005. African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary 'enigmas'. Proceedings of the Royal Society B: Biological Sciences 272 (1565): 849-858
Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299
Besnard, Guillaume, Joris A. M. Bertrand, Boris Delahaie, Yann X. C. Bourgeois, Emeline Lhuillier, Christophe Thébaud. 2015. Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura). Biological Journal of the Linnean Society 117 (1): 71-82
Blechschmidt, Karin, Hans-Ulrich Peter, Jacobus De Korte, Michael Wink, Ingrid Seibold, Andreas J. Helbig. 1993. Investigations on the molecular systematics of skuas (Stercorariidae). Zool. Jb. Syst. 120: 379-387.
Bonaccorso, Elisa, Juan M. Guayasamin, A. Townsend Peterson, Adolfo G. Navarro-Sigüenza. 2011. Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae). Zoologica Scripta 40 (4): 336-349.
Brian Tilston Smith, Robert W. Bryson, William M. Mauck, Jaime Chaves, Mark B. Robbins, Alexandre Aleixo, John Klicka, 2018, 'Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae)', Molecular Phylogenetics and Evolution, vol. 126, pp. 45-57
Bridge, E. S., Jones, A. W., & Baker, A. J. (2005). A phylogenetic framework for the terns (Sternini) inferred from mtDNA sequences: implications for taxonomy and plumage evolution. Molecular Phylogenetics and Evolution, 35(2), 459–469. doi:10.1016/j.ympev.2004.12.010
Brumfield, R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61 (2): 346-367.
Bruxaux, J., Gabrielli, M., Ashari, H., Prŷs-Jones, R., Joseph, L., Milá, B., Besnard, G., & Thébaud, C. (2018). Recovering the evolutionary history of crowned pigeons (Columbidae: Goura): Implications for the biogeography and conservation of New Guinean lowland birds. Molecular Phylogenetics and Evolution, 120, 248–258.
Bryson, R. W., Faircloth, B. C., Tsai, W. L. E., McCormack, J. E., & Klicka, J. (2016). Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae). The Auk, 133(3), 451–458.
Buainain, N., Ferreira, M., Avendaño, J. E., Cadena, C. D., Faircloth, B. C., Brumfield, R. T., Cracraft, J., & Ribas, C. C. (2022). Biogeography of a neotropical songbird radiation reveals similar diversification dynamics between montane and lowland clades. Journal of Biogeography. Portico.
Burleigh, J. Gordon, Rebecca T. Kimball, Edward L. Braun. 2015. Building the avian tree of life using a large-scale, sparse supermatrix. Molecular Phylogenetics and Evolution 84: 53-63
Burns, Kevin J., Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution 75: 41-77.
Cai, T., Cibois, A., Alström, P., Moyle, R. G., Kennedy, J. D., Shao, S., Zhang, R., Irestedt, M., Ericson, P. G. P., Gelang, M., Qu, Y., Lei, F., & Fjeldså, J. (2019). Near-complete phylogeny and taxonomic revision of the world’s babblers (Aves: Passeriformes). Molecular Phylogenetics and Evolution, 130, 346–356.
Cai, T., Wu, G., Sun, L., Zhang, Y., Peng, Z., Guo, Y., Liu, X., Pan, T., Chang, J., Sun, Z., & Zhang, B. (2021). Biogeography and diversification of Old World buntings (Aves: Emberizidae): radiation in open habitats. Journal of Avian Biology, 52(6). Portico.
Campillo, L. C., Oliveros, C. H., Sheldon, F. H., & Moyle, R. G. (2018). Genomic data resolve gene tree discordance in spiderhunters (Nectariniidae, Arachnothera). Molecular Phylogenetics and Evolution, 120, 151–157.
Cerasale, David J., Roi Dor, David W. Winkler, Irby J. Lovette. 2012. Phylogeny of the Tachycineta genus of New World swallows: insights from complete mitochondrial genomes. Molecular Phylogenetics and Evolution 63 (1): 64-71.
Chambers, GK, Moeke, C, Steel, R, Trueman, JWH. 2009. Phylogenetic analysis of the 24 named albatross taxa based on full mitochondrial cytochrome b DNA sequences. Notornis 56 (2): 82-94.
Chaves, Jaime A., José R. Hidalgo, John Klicka. 2013. Biogeography and evolutionary history of the Neotropical genus Saltator (Aves: Thraupini). Journal of Biogeography 40 (11): 2180-2190.
Chen, D., Hosner, P. A., Dittmann, D. L., O’Neill, J. P., Birks, S. M., Braun, E. L., & Kimball, R. T. (2021). Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. BMC Ecology and Evolution, 21(1).
Chesser, R. Terry, Carol K. L. Yeung, Cheng-Te Yao, Xiu-Hua Tian, Shou-Hsien Li. 2010. Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA. Zootaxa 2603: 53-60.
Cibois, Alice, Jean-Claude Thibault, Céline Bonillo, Christopher E. Filardi, Dick Watling, Eric Pasquet. 2014. Phylogeny and biogeography of the fruit doves (Aves: Columbidae). Molecular Phylogenetics and Evolution 70: 442-453.
Cicero, C., Mason, N. A., Benedict, L., & Rising, J. D. (2020). Behavioral, morphological, and ecological trait evolution in two clades of New World Sparrows (AimophilaandPeucaea, Passerellidae). PeerJ, 8, e9249. Portico.
Claramunt, Santiago, Joel Cracraft. 2015. A new time tree reveals Earth historys imprint on the evolution of modern birds. Science Advances 1 (11): e1501005-e1501005
Corl, Ammon, Hans Ellegren. 2013. Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution 67 (2): 358-366
Dantas, Sidnei M., Jason D. Weckstein, John M. Bates, Niels K. Krabbe, Carlos Daniel Cadena, Mark B. Robbins, Eugenio Valderrama, Alexandre Aleixo. 2016. Molecular systematics of the new world screech-owls (Megascops: Aves, Strigidae): biogeographic and taxonomic implications. Molecular Phylogenetics and Evolution 94: 626-634
De Silva, T. N., Peterson, A. T., & Perktas, U. (2019). An extensive molecular phylogeny of weaverbirds (Aves: Ploceidae) unveils broad nonmonophyly of traditional genera and new relationships. The Auk, 136(3).
Derryberry, E.P., Claramunt S., Derryberry G.E., Chesser R.T., Cracraft J., Aleixo A., Perez-eman J., Remsen J., and Brumfield R. 2011. Lineage diversification and morphological evolution in a large-scale continental radiation: the Neotropical ovenbirds and woodcreepers (Aves: Furnariidae). Evolution 65 (10): 2973-2986.
Donne-Goussé, Carole, Vincent Laudet, Catherine Hänni. 2002. A molecular phylogeny of anseriformes based on mitochondrial DNA analysis. Molecular Phylogenetics and Evolution 23 (3): 339-356
Dor, Roi, Rebecca J. Safran, Frederick H. Sheldon, David W. Winkler, Irby J. Lovette. 2010. Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex. Molecular Phylogenetics and Evolution 56 (1): 409-418.
Dos Remedios, Natalie, Patricia L.M. Lee, Terry Burke, Tamás Székely, Clemens Küpper. 2015. North or south? Phylogenetic and biogeographic origins of a globally distributed avian clade. Molecular Phylogenetics and Evolution 89:151-159.
Dufort, Matthew J. 2015. An augmented supermatrix phylogeny of the avian family Picidae reveals uncertainty deep in the family tree. Molecular Phylogenetics and Evolution
Dumbacher, J. P., Deiner, K., Thompson, L., & Fleischer, R. C. (2008). Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds. Molecular Phylogenetics and Evolution, 49(3), 774-781.
Dumbacher, J., Pratt, T.K., Fleischer, R.C. 2003. Phylogeny of the owlet-nightjars (Aves: Aegothelidae) based on mitochondrial DNA sequence. Molecular Phylogenetics and Evolution 29 (3): 540-549.
EDWIN SCHOLES III, 2008, 'Evolution of the courtship phenotype in the bird of paradise genus Parotia (Aves: Paradisaeidae): homology, phylogeny, and modularity', Biological Journal of the Linnean Society, vol. 94, no. 3, pp. 491-504
Ericson, P. G. P., Irestedt, M., Nylander, J. A. A., Christidis, L., Joseph, L., & Qu, Y. (2020). Parallel Evolution of Bower-Building Behavior in Two Groups of Bowerbirds Suggested by Phylogenomics. Systematic Biology, 69(5), 820–829.
Ericson, Per GP, Seraina Klopfstein, Martin Irestedt, Jacqueline MT Nguyen and Johan AA Nylander. 2014. Dating the diversification of the major lineages of Passeriformes (Aves). BMC Evolutionary Biology, 14(8).
Fain, M., Krajewski C., & Houde P. 2007. Phylogeny of "core Gruiformes" (Aves: Grues) and resolution of the Limpkin-Sungrebe problem. Molecular Phylogenetics and Evolution 43 (2): 515-529.
Friederike Woog, Michael Wink, Eskandar Rastegar-Pouyani, Javier Gonzalez, Barbara Helm, 2008, 'Distinct taxonomic position of the Madagascar stonechat (Saxicola torquatus sibilla) revealed by nucleotide sequences of mitochondrial DNA', Journal of Ornithology, vol. 149, no. 3, pp. 423-430
Fuchs, J., Johnson, J. A., & Mindell, D. P. (2015). Rapid diversification of falcons (Aves: Falconidae) due to expansion of open habitats in the Late Miocene. Molecular Phylogenetics and Evolution, 82, 166–182.
Fuchs, Jérôme, Jan I. Ohlson, Per G. P. Ericson, Eric Pasquet. 2007. Synchronous intercontinental splits between assemblages of woodpeckers suggested by molecular data. Zoologica Scripta 36 (1): 11-25
Fuchs, Jérôme, Jeff A. Johnson, David P. Mindell. 2012. Molecular systematics of the caracaras and allies (Falconidae: Polyborinae) inferred from mitochondrial and nuclear sequence data. Ibis 154 (3): 520-532.
Fuchs, Jérôme, Steven Chen, Jeff A. Johnson, David P. Mindell. 2011. Pliocene diversification within the South American forest falcons (Falconidae: Micrastur). Molecular Phylogenetics and Evolution 60 (3): 398-407.
Fulton, T. L., B. Letts, B. Shapiro. 2012. Multiple losses of flight and recent speciation in steamer ducks. Proceedings of the Royal Society B: Biological Sciences 279 (1737): 2339-2346.
Garcia-R, J. C., Lemmon, E. M., Lemmon, A. R., & French, N. (2020). Phylogenomic Reconstruction Sheds Light on New Relationships and Timescale of Rails (Aves: Rallidae) Evolution. Diversity, 12(2), 70.
Garcia-R., J. C., & Trewick, S. A. (2015). Dispersal and speciation in purple swamphens (Rallidae:Porphyrio). The Auk, 132(1), 140–155.
García-Deras, Gabriela M., Nandadevi Cortés-Rodríguez, Magali Honey, Adolfo G. Navarro-sigüenza, Jaime García-Moreno, Blanca E. Hernández-Baños. 2008. Phylogenetic relationships within the genus Cynanthus (Aves: Trochilidae), with emphasis on C. doubledayi. Zootaxa 1742: 61-68.
García–R, Juan C., Gillian C. Gibb, Steve A. Trewick. 2014. Eocene diversification of crown group rails (Aves: Gruiformes: Rallidae). PLoS ONE 9 (10): e109635
Gavryushkina, Alexandra, Tracy A. Heath, Daniel T. Ksepka, Tanja Stadler, David Welch, Alexei J. Drummond. 2016. Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, p. syw060
Gibb, G. C., & Shepherd, L. D. (2022). Recent evolution of extreme sexual dimorphism in the huia (Heteralocha acutirostris; Callaeidae). Molecular Phylogenetics and Evolution, 175, 107575.
Gibb, Gillian C., Ryan England, Gerrit Hartig, P.A. (Trish) McLenachan, Briar L. Taylor Smith, Bennet J. McComish, Alan Cooper, David Penny. 2015. New Zealand passerines help clarify the diversification of major songbird lineages during the Oligocene. Genome Biology and Evolution 7 (11): 2983-2995.
Gibson, Rosemary, Allan Baker. 2012. Multiple gene sequences resolve phylogenetic relationships in the shorebird suborder Scolopaci (Aves: Charadriiformes). Molecular Phylogenetics and Evolution 64 (1): 66-72
Gonzalez, J., H. Düttmann, M. Wink. 2009. Phylogenetic relationships based on two mitochondrial genes and hybridization patterns in Anatidae. Journal of Zoology 279 (3): 310-318.
Gonzalez, Juan-Carlos T., Ben C. Sheldon, Nigel J. Collar, Joseph A. Tobias. 2013. A comprehensive molecular phylogeny for the hornbills (Aves: Bucerotidae). Molecular Phylogenetics and Evolution 67 (2): 468-483.
Han, Kin-Lan, Mark B. Robbins, Michael J. Braun. 2010. A multi-gene estimate of phylogeny in the nightjars and nighthawks (Caprimulgidae). Molecular Phylogenetics and Evolution 55 (2): 443-453.
Harris, R.B., M.D. Carling, I.J. Lovette. 2014. The influence of sampling design on species tree inference: a new relationship for the New World chickadees (Aves: Poecile). Evolution 68 (2): 501-513.
Harris, Rebecca B., Sharon M. Birks, Adam D. Leaché. 2014. Incubator birds: biogeographical origins and evolution of underground nesting in megapodes (Galliformes: Megapodiidae). Journal of Biogeography doi: 10.1111/jbi.12357
Harvey, M. G., Bravo, G. A., Claramunt, S., Cuervo, A. M., Derryberry, G. E., Battilana, J., … Derryberry, E. P. (2020). The evolution of a tropical biodiversity hotspot. Science, 370(6522), 1343–1348. doi:10.1126/science.aaz6970
Hooper, Daniel M., Urban Olsson, Per Alström. 2016. The Rusty-tailed Flycatcher (Muscicapa ruficauda; Aves: Muscicapidae) is a member of the genus Ficedula. Molecular Phylogenetics and Evolution 102: 56-61
Hosner, P. A., Braun, E. L., & Kimball, R. T. (2016). Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Molecular Phylogenetics and Evolution, 102, 320–330.
Hosner, Peter A. Brant C. Faircloth, Travis C. Glenn, Edward L. Braun, Rebecca T. Kimball. 2015. Avoiding missing data biases in phylogenomic inference: an empirical study in the landfowl (Aves: Galliformes). Molecular Biology and Evolution 33 (4): 1110-1125
Hruska, J. P., Holmes, J., Oliveros, C., Shakya, S., Lavretsky, P., McCracken, K. G., Sheldon, F. H., & Moyle, R. G. (2023). Ultraconserved elements resolve the phylogeny and corroborate patterns of molecular rate variation in herons (Aves: Ardeidae). Ornithology.
Hugall, Andrew F., Devi Stuart-Fox. 2012. Accelerated speciation in colour-polymorphic birds. Nature 485 (7400): 631-634.
Imfeld, Barker, Brumfield, Mitochondrial genomes and thousands of ultraconserved elements resolve the taxonomy and historical biogeography of the Euphonia and Chlorophonia finches (Passeriformes: Fringillidae), The Auk, Volume 137, Issue 3, 1 July 2020, ukaa016,
Irby J. Lovette, Brynn V. McCleery, Amanda L. Talaba, Dustin R. Rubenstein, 2008, 'A complete species-level molecular phylogeny for the “Eurasian” starlings (Sturnidae: Sturnus, Acridotheres, and allies): Recent diversification in a highly social and dispersive avian group', Molecular Phylogenetics and Evolution, vol. 47, no. 1, pp. 251-260
Irestedt, Martin, Knud A Jønsson, Jon Fjeldså, Les Christidis, Per GP Ericson. 2009. An unexpectedly long history of sexual selection in birds-of-paradise. BMC Evolutionary Biology 9 (1): 235
JULIE FEINSTEIN, XIAOJUN YANG, SHOU-HSIEN LI, 2007, 'Molecular systematics and historical biogeography of the Black-browed Barbet species complex (Megalaima oorti)', Ibis, vol. 150, no. 1, pp. 40-49
Javier Gonzalez, Michael Wink, 2008, 'Phylogenetic position of the monotypic Des Murs’ Wiretail (Sylviorthorhynchus desmursii, Aves: Furnariidae) based on mitochondrial and nuclear DNA', Journal of Ornithology, vol. 149, no. 3, pp. 393-398
Jetz, W., G. H. Thomas, J. B. Joy, K. Hartmann, A. O. Mooers. 2012. The global diversity of birds in space and time. Nature 491 (7424): 444-448
Jha, A., Seneviratne, S., Prayag, H. S., & Vasudevan, K. (2021). Phylogeny identifies multiple colonisation events and Miocene aridification as drivers of South Asian bulbul (Passeriformes: Pycnonotidae) diversification. Organisms Diversity & Evolution, 21(4), 783–794.
Johansson, Ulf S., Jan Ekman, Rauri C.K. Bowie, Peter Halvarsson, Jan I. Ohlson, Trevor D. Price, Per G.P. Ericson. 2013. A complete multilocus species phylogeny of the tits and chickadees (Aves: Paridae). Molecular Phylogenetics and Evolution 69 (3): 852-860.
Johnson, Jeff A., Joseph W. Brown, Jérôme Fuchs, David P. Mindell, 2016, 'Multi-locus phylogenetic inference among New World Vultures (Aves: Cathartidae)', Molecular Phylogenetics and Evolution, vol. 105, pp. 193-199
Johnson, K. P., Weckstein, J. D., Virrueta Herrera, S., & Doña, J. (2021). The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus. Molecular Phylogenetics and Evolution, 165, 107297.
Johnson, O., Howard, J. T., & Brumfield, R. T. (2021). Systematics of a Neotropical clade of dead-leaf-foraging antwrens (Aves: Thamnophilidae; Epinecrophylla). Molecular Phylogenetics and Evolution, 154, 106962.
Joseph, Leo, Alicia Toon, Erin E. Schirtzinger, Timothy F. Wright. 2011. Molecular systematics of two enigmatic genera Psittacella and Pezoporus illuminate the ecological radiation of Australo-Papuan parrots (Aves: Psittaciformes). Molecular Phylogenetics and Evolution 59 (3): 675-684.
Juan Carlos Illera, David S. Richardson, Barbara Helm, Juan Carlos Atienza, Brent C. Emerson, 2008, 'Phylogenetic relationships, biogeography and speciation in the avian genus Saxicola', Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 1145-1154
Jérôme Fuchs, Jean-Marc Pons, Steven M Goodman, Vincent Bretagnolle, Martim Melo, Rauri CK Bowie, David Currie, Roger Safford, Munir Z Virani, Simon Thomsett, Alawi Hija, Corinne Cruaud, Eric Pasquet, 2008, 'Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna', BMC Evolutionary Biology, vol. 8, no. 1, p. 197
Jønsson, Knud A., Rauri C. K. Bowie, Robert G. Moyle, Martin Irestedt, Les Christidis, Janette A. Norman, Jon Fjeldså. 2010. Phylogeny and biogeography of Oriolidae (Aves: Passeriformes). Ecography 33 (2): 232-241.
Jønsson, Knud Andreas, Pierre-Henri Fabre, Jonathan D. Kennedy, Ben G. Holt, Michael K. Borregaard, Carsten Rahbek, Jon Fjeldså. 2016. A supermatrix phylogeny of corvoid passerine birds (Aves: Corvides). Molecular Phylogenetics and Evolution 94: 87-94.
Kennedy, J. D., Marki, P. Z., Reeve, A. H., Blom, M. P. K., Prawiradilaga, D. M., Haryoko, T., Koane, B., Kamminga, P., Irestedt, M., Jønsson, K. A., & Sheard, C. (2022). Diversification and community assembly of the world’s largest tropical island. Global Ecology and Biogeography. Portico.
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